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@@ -32,7 +32,6 @@ import (
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"fmt"
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"io"
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"io/ioutil"
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- "sort"
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"sync"
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"github.com/ethereum/go-ethereum/metrics"
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@@ -44,8 +43,13 @@ import (
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)
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const (
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- gcArrayFreeRatio = 0.1
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- maxGCitems = 5000 // max number of items to be gc'd per call to collectGarbage()
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+ defaultGCRatio = 10
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+ defaultMaxGCRound = 10000
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+ defaultMaxGCBatch = 5000
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+
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+ wEntryCnt = 1 << 0
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+ wIndexCnt = 1 << 1
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+ wAccessCnt = 1 << 2
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)
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var (
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@@ -61,6 +65,7 @@ var (
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keyData = byte(6)
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keyDistanceCnt = byte(7)
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keySchema = []byte{8}
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+ keyGCIdx = byte(9) // access to chunk data index, used by garbage collection in ascending order from first entry
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)
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var (
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@@ -68,7 +73,7 @@ var (
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)
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type gcItem struct {
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- idx uint64
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+ idx *dpaDBIndex
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value uint64
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idxKey []byte
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po uint8
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@@ -89,6 +94,16 @@ func NewLDBStoreParams(storeparams *StoreParams, path string) *LDBStoreParams {
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}
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}
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+type garbage struct {
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+ maxRound int // maximum number of chunks to delete in one garbage collection round
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+ maxBatch int // maximum number of chunks to delete in one db request batch
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+ ratio int // 1/x ratio to calculate the number of chunks to gc on a low capacity db
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+ count int // number of chunks deleted in running round
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+ target int // number of chunks to delete in running round
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+ batch *dbBatch // the delete batch
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+ runC chan struct{} // struct in chan means gc is NOT running
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+}
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+
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type LDBStore struct {
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db *LDBDatabase
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@@ -102,12 +117,12 @@ type LDBStore struct {
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hashfunc SwarmHasher
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po func(Address) uint8
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- batchC chan bool
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batchesC chan struct{}
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closed bool
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batch *dbBatch
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lock sync.RWMutex
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quit chan struct{}
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+ gc *garbage
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// Functions encodeDataFunc is used to bypass
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// the default functionality of DbStore with
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@@ -166,9 +181,33 @@ func NewLDBStore(params *LDBStoreParams) (s *LDBStore, err error) {
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data, _ = s.db.Get(keyDataIdx)
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s.dataIdx = BytesToU64(data)
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+ // set up garbage collection
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+ s.gc = &garbage{
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+ maxBatch: defaultMaxGCBatch,
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+ maxRound: defaultMaxGCRound,
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+ ratio: defaultGCRatio,
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+ }
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+
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+ s.gc.runC = make(chan struct{}, 1)
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+ s.gc.runC <- struct{}{}
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+
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return s, nil
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}
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+// initialize and set values for processing of gc round
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+func (s *LDBStore) startGC(c int) {
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+
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+ s.gc.count = 0
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+ // calculate the target number of deletions
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+ if c >= s.gc.maxRound {
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+ s.gc.target = s.gc.maxRound
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+ } else {
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+ s.gc.target = c / s.gc.ratio
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+ }
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+ s.gc.batch = newBatch()
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+ log.Debug("startgc", "requested", c, "target", s.gc.target)
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+}
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+
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// NewMockDbStore creates a new instance of DbStore with
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// mockStore set to a provided value. If mockStore argument is nil,
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// this function behaves exactly as NewDbStore.
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@@ -225,6 +264,31 @@ func getDataKey(idx uint64, po uint8) []byte {
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return key
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}
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+func getGCIdxKey(index *dpaDBIndex) []byte {
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+ key := make([]byte, 9)
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+ key[0] = keyGCIdx
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+ binary.BigEndian.PutUint64(key[1:], index.Access)
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+ return key
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+}
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+
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+func getGCIdxValue(index *dpaDBIndex, po uint8, addr Address) []byte {
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+ val := make([]byte, 41) // po = 1, index.Index = 8, Address = 32
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+ val[0] = po
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+ binary.BigEndian.PutUint64(val[1:], index.Idx)
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+ copy(val[9:], addr)
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+ return val
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+}
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+
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+func parseGCIdxEntry(accessCnt []byte, val []byte) (index *dpaDBIndex, po uint8, addr Address) {
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+ index = &dpaDBIndex{
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+ Idx: binary.BigEndian.Uint64(val[1:]),
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+ Access: binary.BigEndian.Uint64(accessCnt),
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+ }
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+ po = val[0]
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+ addr = val[9:]
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+ return
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+}
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+
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func encodeIndex(index *dpaDBIndex) []byte {
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data, _ := rlp.EncodeToBytes(index)
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return data
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@@ -247,55 +311,70 @@ func decodeData(addr Address, data []byte) (*chunk, error) {
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return NewChunk(addr, data[32:]), nil
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}
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-func (s *LDBStore) collectGarbage(ratio float32) {
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- log.Trace("collectGarbage", "ratio", ratio)
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+func (s *LDBStore) collectGarbage() error {
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- metrics.GetOrRegisterCounter("ldbstore.collectgarbage", nil).Inc(1)
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+ // prevent duplicate gc from starting when one is already running
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+ select {
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+ case <-s.gc.runC:
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+ default:
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+ return nil
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+ }
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- it := s.db.NewIterator()
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- defer it.Release()
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+ s.lock.Lock()
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+ entryCnt := s.entryCnt
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+ s.lock.Unlock()
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- garbage := []*gcItem{}
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- gcnt := 0
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+ metrics.GetOrRegisterCounter("ldbstore.collectgarbage", nil).Inc(1)
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- for ok := it.Seek([]byte{keyIndex}); ok && (gcnt < maxGCitems) && (uint64(gcnt) < s.entryCnt); ok = it.Next() {
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- itkey := it.Key()
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+ // calculate the amount of chunks to collect and reset counter
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+ s.startGC(int(entryCnt))
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+ log.Debug("collectGarbage", "target", s.gc.target, "entryCnt", entryCnt)
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- if (itkey == nil) || (itkey[0] != keyIndex) {
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- break
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- }
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+ var totalDeleted int
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+ for s.gc.count < s.gc.target {
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+ it := s.db.NewIterator()
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+ ok := it.Seek([]byte{keyGCIdx})
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+ var singleIterationCount int
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- // it.Key() contents change on next call to it.Next(), so we must copy it
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- key := make([]byte, len(it.Key()))
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- copy(key, it.Key())
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+ // every batch needs a lock so we avoid entries changing accessidx in the meantime
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+ s.lock.Lock()
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+ for ; ok && (singleIterationCount < s.gc.maxBatch); ok = it.Next() {
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- val := it.Value()
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+ // quit if no more access index keys
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+ itkey := it.Key()
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+ if (itkey == nil) || (itkey[0] != keyGCIdx) {
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+ break
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+ }
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- var index dpaDBIndex
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+ // get chunk data entry from access index
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+ val := it.Value()
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+ index, po, hash := parseGCIdxEntry(itkey[1:], val)
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+ keyIdx := make([]byte, 33)
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+ keyIdx[0] = keyIndex
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+ copy(keyIdx[1:], hash)
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- hash := key[1:]
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- decodeIndex(val, &index)
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- po := s.po(hash)
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+ // add delete operation to batch
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+ s.delete(s.gc.batch.Batch, index, keyIdx, po)
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+ singleIterationCount++
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+ s.gc.count++
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- gci := &gcItem{
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- idxKey: key,
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- idx: index.Idx,
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- value: index.Access, // the smaller, the more likely to be gc'd. see sort comparator below.
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- po: po,
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+ // break if target is not on max garbage batch boundary
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+ if s.gc.count >= s.gc.target {
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+ break
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+ }
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}
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- garbage = append(garbage, gci)
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- gcnt++
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+ s.writeBatch(s.gc.batch, wEntryCnt)
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+ s.lock.Unlock()
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+ it.Release()
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+ log.Trace("garbage collect batch done", "batch", singleIterationCount, "total", s.gc.count)
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}
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- sort.Slice(garbage[:gcnt], func(i, j int) bool { return garbage[i].value < garbage[j].value })
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-
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- cutoff := int(float32(gcnt) * ratio)
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- metrics.GetOrRegisterCounter("ldbstore.collectgarbage.delete", nil).Inc(int64(cutoff))
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+ s.gc.runC <- struct{}{}
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+ log.Debug("garbage collect done", "c", s.gc.count)
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- for i := 0; i < cutoff; i++ {
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- s.delete(garbage[i].idx, garbage[i].idxKey, garbage[i].po)
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- }
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+ metrics.GetOrRegisterCounter("ldbstore.collectgarbage.delete", nil).Inc(int64(totalDeleted))
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+ return nil
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}
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// Export writes all chunks from the store to a tar archive, returning the
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@@ -474,7 +553,7 @@ func (s *LDBStore) Cleanup(f func(*chunk) bool) {
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// if chunk is to be removed
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if f(c) {
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log.Warn("chunk for cleanup", "key", fmt.Sprintf("%x", key), "ck", fmt.Sprintf("%x", ck), "dkey", fmt.Sprintf("%x", datakey), "dataidx", index.Idx, "po", po, "len data", len(data), "len sdata", len(c.sdata), "size", cs)
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- s.delete(index.Idx, getIndexKey(key[1:]), po)
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+ s.deleteNow(&index, getIndexKey(key[1:]), po)
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removed++
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errorsFound++
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}
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@@ -526,24 +605,43 @@ func (s *LDBStore) ReIndex() {
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log.Warn(fmt.Sprintf("Found %v errors out of %v entries", errorsFound, total))
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}
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-func (s *LDBStore) Delete(addr Address) {
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+// Delete is removes a chunk and updates indices.
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+// Is thread safe
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+func (s *LDBStore) Delete(addr Address) error {
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s.lock.Lock()
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defer s.lock.Unlock()
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ikey := getIndexKey(addr)
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- var indx dpaDBIndex
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- s.tryAccessIdx(ikey, &indx)
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+ idata, err := s.db.Get(ikey)
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+ if err != nil {
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+ return err
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+ }
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- s.delete(indx.Idx, ikey, s.po(addr))
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+ var idx dpaDBIndex
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+ decodeIndex(idata, &idx)
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+ proximity := s.po(addr)
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+ return s.deleteNow(&idx, ikey, proximity)
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}
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-func (s *LDBStore) delete(idx uint64, idxKey []byte, po uint8) {
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+// executes one delete operation immediately
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+// see *LDBStore.delete
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+func (s *LDBStore) deleteNow(idx *dpaDBIndex, idxKey []byte, po uint8) error {
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+ batch := new(leveldb.Batch)
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+ s.delete(batch, idx, idxKey, po)
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+ return s.db.Write(batch)
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+}
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+
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+// adds a delete chunk operation to the provided batch
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+// if called directly, decrements entrycount regardless if the chunk exists upon deletion. Risk of wrap to max uint64
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+func (s *LDBStore) delete(batch *leveldb.Batch, idx *dpaDBIndex, idxKey []byte, po uint8) {
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metrics.GetOrRegisterCounter("ldbstore.delete", nil).Inc(1)
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- batch := new(leveldb.Batch)
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+ gcIdxKey := getGCIdxKey(idx)
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+ batch.Delete(gcIdxKey)
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+ dataKey := getDataKey(idx.Idx, po)
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+ batch.Delete(dataKey)
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batch.Delete(idxKey)
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- batch.Delete(getDataKey(idx, po))
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s.entryCnt--
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dbEntryCount.Dec(1)
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cntKey := make([]byte, 2)
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@@ -551,7 +649,6 @@ func (s *LDBStore) delete(idx uint64, idxKey []byte, po uint8) {
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cntKey[1] = po
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batch.Put(keyEntryCnt, U64ToBytes(s.entryCnt))
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batch.Put(cntKey, U64ToBytes(s.bucketCnt[po]))
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- s.db.Write(batch)
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}
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func (s *LDBStore) BinIndex(po uint8) uint64 {
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@@ -572,6 +669,9 @@ func (s *LDBStore) CurrentStorageIndex() uint64 {
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return s.dataIdx
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}
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+// Put adds a chunk to the database, adding indices and incrementing global counters.
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+// If it already exists, it merely increments the access count of the existing entry.
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+// Is thread safe
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func (s *LDBStore) Put(ctx context.Context, chunk Chunk) error {
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metrics.GetOrRegisterCounter("ldbstore.put", nil).Inc(1)
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log.Trace("ldbstore.put", "key", chunk.Address())
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@@ -594,7 +694,7 @@ func (s *LDBStore) Put(ctx context.Context, chunk Chunk) error {
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if err != nil {
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s.doPut(chunk, &index, po)
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} else {
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- log.Trace("ldbstore.put: chunk already exists, only update access", "key", chunk.Address)
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+ log.Debug("ldbstore.put: chunk already exists, only update access", "key", chunk.Address(), "po", po)
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decodeIndex(idata, &index)
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}
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index.Access = s.accessCnt
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@@ -602,6 +702,10 @@ func (s *LDBStore) Put(ctx context.Context, chunk Chunk) error {
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idata = encodeIndex(&index)
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s.batch.Put(ikey, idata)
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+ // add the access-chunkindex index for garbage collection
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+ gcIdxKey := getGCIdxKey(&index)
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+ gcIdxData := getGCIdxValue(&index, po, chunk.Address())
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+ s.batch.Put(gcIdxKey, gcIdxData)
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s.lock.Unlock()
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select {
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@@ -617,7 +721,7 @@ func (s *LDBStore) Put(ctx context.Context, chunk Chunk) error {
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}
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}
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-// force putting into db, does not check access index
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+// force putting into db, does not check or update necessary indices
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func (s *LDBStore) doPut(chunk Chunk, index *dpaDBIndex, po uint8) {
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data := s.encodeDataFunc(chunk)
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dkey := getDataKey(s.dataIdx, po)
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@@ -659,38 +763,26 @@ func (s *LDBStore) writeCurrentBatch() error {
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if l == 0 {
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return nil
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}
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- e := s.entryCnt
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- d := s.dataIdx
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- a := s.accessCnt
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s.batch = newBatch()
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- b.err = s.writeBatch(b, e, d, a)
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+ b.err = s.writeBatch(b, wEntryCnt|wAccessCnt|wIndexCnt)
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close(b.c)
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- for e > s.capacity {
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- log.Trace("for >", "e", e, "s.capacity", s.capacity)
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- // Collect garbage in a separate goroutine
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- // to be able to interrupt this loop by s.quit.
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- done := make(chan struct{})
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- go func() {
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- s.collectGarbage(gcArrayFreeRatio)
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- log.Trace("collectGarbage closing done")
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- close(done)
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- }()
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-
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- select {
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- case <-s.quit:
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- return errors.New("CollectGarbage terminated due to quit")
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- case <-done:
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- }
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- e = s.entryCnt
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+ if s.entryCnt >= s.capacity {
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+ go s.collectGarbage()
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}
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return nil
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}
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// must be called non concurrently
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-func (s *LDBStore) writeBatch(b *dbBatch, entryCnt, dataIdx, accessCnt uint64) error {
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- b.Put(keyEntryCnt, U64ToBytes(entryCnt))
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- b.Put(keyDataIdx, U64ToBytes(dataIdx))
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- b.Put(keyAccessCnt, U64ToBytes(accessCnt))
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+func (s *LDBStore) writeBatch(b *dbBatch, wFlag uint8) error {
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+ if wFlag&wEntryCnt > 0 {
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+ b.Put(keyEntryCnt, U64ToBytes(s.entryCnt))
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+ }
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+ if wFlag&wIndexCnt > 0 {
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+ b.Put(keyDataIdx, U64ToBytes(s.dataIdx))
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+ }
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+ if wFlag&wAccessCnt > 0 {
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+ b.Put(keyAccessCnt, U64ToBytes(s.accessCnt))
|
|
|
+ }
|
|
|
l := b.Len()
|
|
|
if err := s.db.Write(b.Batch); err != nil {
|
|
|
return fmt.Errorf("unable to write batch: %v", err)
|
|
|
@@ -713,17 +805,22 @@ func newMockEncodeDataFunc(mockStore *mock.NodeStore) func(chunk Chunk) []byte {
|
|
|
}
|
|
|
|
|
|
// try to find index; if found, update access cnt and return true
|
|
|
-func (s *LDBStore) tryAccessIdx(ikey []byte, index *dpaDBIndex) bool {
|
|
|
+func (s *LDBStore) tryAccessIdx(ikey []byte, po uint8, index *dpaDBIndex) bool {
|
|
|
idata, err := s.db.Get(ikey)
|
|
|
if err != nil {
|
|
|
return false
|
|
|
}
|
|
|
decodeIndex(idata, index)
|
|
|
+ oldGCIdxKey := getGCIdxKey(index)
|
|
|
s.batch.Put(keyAccessCnt, U64ToBytes(s.accessCnt))
|
|
|
s.accessCnt++
|
|
|
index.Access = s.accessCnt
|
|
|
idata = encodeIndex(index)
|
|
|
s.batch.Put(ikey, idata)
|
|
|
+ newGCIdxKey := getGCIdxKey(index)
|
|
|
+ newGCIdxData := getGCIdxValue(index, po, ikey)
|
|
|
+ s.batch.Delete(oldGCIdxKey)
|
|
|
+ s.batch.Put(newGCIdxKey, newGCIdxData)
|
|
|
select {
|
|
|
case s.batchesC <- struct{}{}:
|
|
|
default:
|
|
|
@@ -755,6 +852,9 @@ func (s *LDBStore) PutSchema(schema string) error {
|
|
|
return s.db.Put(keySchema, []byte(schema))
|
|
|
}
|
|
|
|
|
|
+// Get retrieves the chunk matching the provided key from the database.
|
|
|
+// If the chunk entry does not exist, it returns an error
|
|
|
+// Updates access count and is thread safe
|
|
|
func (s *LDBStore) Get(_ context.Context, addr Address) (chunk Chunk, err error) {
|
|
|
metrics.GetOrRegisterCounter("ldbstore.get", nil).Inc(1)
|
|
|
log.Trace("ldbstore.get", "key", addr)
|
|
|
@@ -764,12 +864,14 @@ func (s *LDBStore) Get(_ context.Context, addr Address) (chunk Chunk, err error)
|
|
|
return s.get(addr)
|
|
|
}
|
|
|
|
|
|
+// TODO: To conform with other private methods of this object indices should not be updated
|
|
|
func (s *LDBStore) get(addr Address) (chunk *chunk, err error) {
|
|
|
var indx dpaDBIndex
|
|
|
if s.closed {
|
|
|
return nil, ErrDBClosed
|
|
|
}
|
|
|
- if s.tryAccessIdx(getIndexKey(addr), &indx) {
|
|
|
+ proximity := s.po(addr)
|
|
|
+ if s.tryAccessIdx(getIndexKey(addr), proximity, &indx) {
|
|
|
var data []byte
|
|
|
if s.getDataFunc != nil {
|
|
|
// if getDataFunc is defined, use it to retrieve the chunk data
|
|
|
@@ -780,13 +882,12 @@ func (s *LDBStore) get(addr Address) (chunk *chunk, err error) {
|
|
|
}
|
|
|
} else {
|
|
|
// default DbStore functionality to retrieve chunk data
|
|
|
- proximity := s.po(addr)
|
|
|
datakey := getDataKey(indx.Idx, proximity)
|
|
|
data, err = s.db.Get(datakey)
|
|
|
log.Trace("ldbstore.get retrieve", "key", addr, "indexkey", indx.Idx, "datakey", fmt.Sprintf("%x", datakey), "proximity", proximity)
|
|
|
if err != nil {
|
|
|
log.Trace("ldbstore.get chunk found but could not be accessed", "key", addr, "err", err)
|
|
|
- s.delete(indx.Idx, getIndexKey(addr), s.po(addr))
|
|
|
+ s.deleteNow(&indx, getIndexKey(addr), s.po(addr))
|
|
|
return
|
|
|
}
|
|
|
}
|
|
|
@@ -813,33 +914,14 @@ func newMockGetDataFunc(mockStore *mock.NodeStore) func(addr Address) (data []by
|
|
|
}
|
|
|
}
|
|
|
|
|
|
-func (s *LDBStore) updateAccessCnt(addr Address) {
|
|
|
-
|
|
|
- s.lock.Lock()
|
|
|
- defer s.lock.Unlock()
|
|
|
-
|
|
|
- var index dpaDBIndex
|
|
|
- s.tryAccessIdx(getIndexKey(addr), &index) // result_chn == nil, only update access cnt
|
|
|
-
|
|
|
-}
|
|
|
-
|
|
|
func (s *LDBStore) setCapacity(c uint64) {
|
|
|
s.lock.Lock()
|
|
|
defer s.lock.Unlock()
|
|
|
|
|
|
s.capacity = c
|
|
|
|
|
|
- if s.entryCnt > c {
|
|
|
- ratio := float32(1.01) - float32(c)/float32(s.entryCnt)
|
|
|
- if ratio < gcArrayFreeRatio {
|
|
|
- ratio = gcArrayFreeRatio
|
|
|
- }
|
|
|
- if ratio > 1 {
|
|
|
- ratio = 1
|
|
|
- }
|
|
|
- for s.entryCnt > c {
|
|
|
- s.collectGarbage(ratio)
|
|
|
- }
|
|
|
+ for s.entryCnt > c {
|
|
|
+ s.collectGarbage()
|
|
|
}
|
|
|
}
|
|
|
|